PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004992-PA
Common NameOsI_04807
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 387aa    MW: 40697.4 Da    PI: 8.1181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004992-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11321366655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L++l+P+     +k  + +++L  Av YIk+Lq
  BGIOSGA004992-PA 321 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVTYIKELQ 366
                       689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.941315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-14318375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-11319370No hitNo description
Gene3DG3DSA:4.10.280.109.3E-15320376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9321366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12321371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MNRMTAPHGG MPPPPMPAAG GLARYGSAPG SLLASIADSV IRGRGVGVVD QLHHHQHQHQ  60
LPPPPPPQQQ QMVGRYFSAE SSGLTSCESS CRTTTTTSTA AAADVGRHPL ERAYGGSGEI  120
HVDASSAAVP LFRHSSSPAG LLSRLMADPH GNGMAATRGM GGYSGGGGDA GAMAHRRLSS  180
QWSFSRQDLP QISEMGGLIP DIGESIVTGG GGNSSSDGAG HGAQSSSFLS SRNFSMSSWD  240
DTNSIMFSPP SSSKKARVAA AAAGDHGDDM VSSFSNIDSQ FGLSKQSSLE MAGMDDFLQL  300
QPDSVACRAR AKRGCATHPR SIAERERRTR ISKRLKKLQD LVPNMDKQTN TSDMLDIAVT  360
YIKELQGQVE KLKHDQANCT CSGKHDC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.577981e-172callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379910341e-172
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682540.0AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613853.10.0PREDICTED: transcription factor bHLH128
TrEMBLA0A0E0FX470.0A0A0E0FX47_ORYNI; Uncharacterized protein
TrEMBLB8A7R50.0B8A7R5_ORYSI; Putative uncharacterized protein
TrEMBLQ5N8U80.0Q5N8U8_ORYSJ; Os01g0900800 protein
STRINGBGIOSGA004992-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os01g67480.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-47bHLH family protein